J3_8OI5_019
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUAAG*CGAU
- Length
- 24 nucleotides
- Bulged bases
- 8OI5|1|1|G|2527, 8OI5|1|1|U|2528, 8OI5|1|1|U|2529, 8OI5|1|1|C|2530, 8OI5|1|1|U|2531, 8OI5|1|1|A|2532, 8OI5|1|1|U|2536, 8OI5|1|1|U|2537
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OI5_019 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.0598
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OI5|1|1|A|2507
8OI5|1|1|G|2508
8OI5|1|1|C|2509
8OI5|1|1|U|2510
*
8OI5|1|1|A|2525
8OI5|1|1|C|2526
8OI5|1|1|G|2527
8OI5|1|1|U|2528
8OI5|1|1|U|2529
8OI5|1|1|C|2530
8OI5|1|1|U|2531
8OI5|1|1|A|2532
8OI5|1|1|G|2533
8OI5|1|1|C|2534
8OI5|1|1|A|2535
8OI5|1|1|U|2536
8OI5|1|1|U|2537
8OI5|1|1|A|2538
8OI5|1|1|A|2539
8OI5|1|1|G|2540
*
8OI5|1|1|C|2550
8OI5|1|1|G|2551
8OI5|1|1|A|2552
8OI5|1|1|U|2553
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AA
- 60S ribosomal protein L27
- Chain AD
- 60S ribosomal protein L30
- Chain AH
- 60S ribosomal protein L34-B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-B
- Chain p
- 60S ribosomal protein L8
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