3D structure

PDB id
8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AGCU*ACGUUCUAGCAUUAAG*CGAU
Length
24 nucleotides
Bulged bases
8OI5|1|1|G|2527, 8OI5|1|1|U|2528, 8OI5|1|1|U|2529, 8OI5|1|1|C|2530, 8OI5|1|1|U|2531, 8OI5|1|1|A|2532, 8OI5|1|1|U|2536, 8OI5|1|1|U|2537
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8OI5_019 not in the Motif Atlas
Homologous match to J3_8C3A_009
Geometric discrepancy: 0.0598
The information below is about J3_8C3A_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_02167.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
Number of instances in this motif group
1

Unit IDs

8OI5|1|1|A|2507
8OI5|1|1|G|2508
8OI5|1|1|C|2509
8OI5|1|1|U|2510
*
8OI5|1|1|A|2525
8OI5|1|1|C|2526
8OI5|1|1|G|2527
8OI5|1|1|U|2528
8OI5|1|1|U|2529
8OI5|1|1|C|2530
8OI5|1|1|U|2531
8OI5|1|1|A|2532
8OI5|1|1|G|2533
8OI5|1|1|C|2534
8OI5|1|1|A|2535
8OI5|1|1|U|2536
8OI5|1|1|U|2537
8OI5|1|1|A|2538
8OI5|1|1|A|2539
8OI5|1|1|G|2540
*
8OI5|1|1|C|2550
8OI5|1|1|G|2551
8OI5|1|1|A|2552
8OI5|1|1|U|2553

Current chains

Chain 1
25S

Nearby chains

Chain AA
60S ribosomal protein L27
Chain AD
60S ribosomal protein L30
Chain AH
60S ribosomal protein L34-B
Chain AQ
60S ribosomal protein L43-A
Chain j
60S ribosomal protein L2-B
Chain p
60S ribosomal protein L8

Coloring options:


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