J3_8OI5_020

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

8OI5|1|1|C|2732, 8OI5|1|1|C|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_020 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.0368

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

8OI5|1|1|G|2623
8OI5|1|1|U|2624
8OI5|1|1|C|2625
*
8OI5|1|1|G|2726
8OI5|1|1|C|2727
8OI5|1|1|C|2728
8OI5|1|1|U|2729
8OI5|1|1|A|2730
8OI5|1|1|U|2731
8OI5|1|1|C|2732
8OI5|1|1|G|2733
8OI5|1|1|A|2734
8OI5|1|1|U|2735
8OI5|1|1|C|2736
8OI5|1|1|C|2737
*
8OI5|1|1|G|2765
8OI5|1|1|G|2766
8OI5|1|1|U|2767
8OI5|1|1|G|2768
8OI5|1|1|C|2769
8OI5|1|1|C|2770

Current chains

Chain 1

25S

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-B

Chain y

60S ribosomal protein L18-A