J3_8OI5_026
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8OI5|1|4|U|60, 8OI5|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OI5_026 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0547
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OI5|1|4|A|44
8OI5|1|4|C|45
*
8OI5|1|4|G|58
8OI5|1|4|A|59
8OI5|1|4|U|60
8OI5|1|4|A|61
8OI5|1|4|C|62
8OI5|1|4|G|63
8OI5|1|4|U|64
*
8OI5|1|4|A|96
8OI5|1|4|A|97
8OI5|1|4|U|98
8OI5|1|4|C|99
8OI5|1|4|U|100
Current chains
- Chain 4
- 5.8S
Nearby chains
- Chain 8
- 60S ribosomal protein L25
- Chain AI
- Ribosomal protein L29
- Chain AK
- 60S ribosomal protein L37-B
- Chain AM
- 60S ribosomal protein L39
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