J3_8OI5_033
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAC*GGG*CAUAAU
- Length
- 13 nucleotides
- Bulged bases
- 8OI5|1|AS|U|618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OI5_033 not in the Motif Atlas
- Homologous match to J3_8C3A_002
- Geometric discrepancy: 0.0612
- The information below is about J3_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_50081.1
- Basepair signature
- cWW-cSS-cWW-tSS-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8OI5|1|AS|A|436
8OI5|1|AS|G|437
8OI5|1|AS|A|438
8OI5|1|AS|C|439
*
8OI5|1|AS|G|488
8OI5|1|AS|G|489
8OI5|1|AS|G|490
*
8OI5|1|AS|C|616
8OI5|1|AS|A|617
8OI5|1|AS|U|618
8OI5|1|AS|A|619
8OI5|1|AS|A|620
8OI5|1|AS|U|621
Current chains
- Chain AS
- 25S
Nearby chains
- Chain BK
- Ribosomal protein L22
- Chain BZ
- 60S ribosomal protein L32
- Chain CA
- 60S ribosomal protein L33-A
Coloring options: