J3_8OI5_050

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAUG*CUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_050 not in the Motif Atlas

Homologous match to J3_8C3A_058

Geometric discrepancy: 0.0526

The information below is about J3_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34320.1

Basepair signature

cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8OI5|1|AS|C|3263
8OI5|1|AS|C|3264
*
8OI5|1|AS|G|3280
8OI5|1|AS|A|3281
8OI5|1|AS|U|3282
8OI5|1|AS|G|3283
*
8OI5|1|AS|C|3353
8OI5|1|AS|U|3354
8OI5|1|AS|G|3355

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BK

Ribosomal protein L22

Chain BY

60S ribosomal protein L31-B