J3_8OI5_066

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AAC*GGAC*GUUU

Length

11 nucleotides

Bulged bases

8OI5|1|B|U|1399, 8OI5|1|B|U|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_066 not in the Motif Atlas

Geometric match to J3_8C3A_043

Geometric discrepancy: 0.1054

The information below is about J3_8C3A_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.3

Basepair signature

cWW-F-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8OI5|1|B|A|1321
8OI5|1|B|A|1322
8OI5|1|B|C|1323
*
8OI5|1|B|G|1372
8OI5|1|B|G|1373
8OI5|1|B|A|1374
8OI5|1|B|C|1375
*
8OI5|1|B|G|1398
8OI5|1|B|U|1399
8OI5|1|B|U|1400
8OI5|1|B|U|1401

Current chains

Chain B

18S

Nearby chains

Chain AR

Guanine nucleotide-binding protein subunit beta-like protein

Chain H

Ribosomal protein S7

Chain S

40S ribosomal protein S16

Chain T

40S ribosomal protein S17-B

Chain W

Ribosomal protein S10

Chain f

40S ribosomal protein S29A