J3_8OI5_075

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUA*UUACG*CAAAG

Length

13 nucleotides

Bulged bases

8OI5|1|CM|A|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_075 not in the Motif Atlas

Homologous match to J3_8C3A_037

Geometric discrepancy: 0.0492

The information below is about J3_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95208.1

Basepair signature

cWW-tWW-tWW-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8OI5|1|CM|C|1022
8OI5|1|CM|U|1023
8OI5|1|CM|A|1024
*
8OI5|1|CM|U|1064
8OI5|1|CM|U|1065
8OI5|1|CM|A|1066
8OI5|1|CM|C|1067
8OI5|1|CM|G|1068
*
8OI5|1|CM|C|1075
8OI5|1|CM|A|1076
8OI5|1|CM|A|1077
8OI5|1|CM|A|1078
8OI5|1|CM|G|1079

Current chains

Chain CM

18S

Nearby chains

Chain CN

40S ribosomal protein S0

Chain DI

40S ribosomal protein S21

Chain DJ

40S ribosomal protein S22-A

Chain DN

40S ribosomal protein S26

Chain DO

40S ribosomal protein S27