J3_8OI5_083
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 8OI5|1|CM|U|1399, 8OI5|1|CM|U|1400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OI5_083 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.0498
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8OI5|1|CM|A|1321
8OI5|1|CM|A|1322
8OI5|1|CM|C|1323
*
8OI5|1|CM|G|1372
8OI5|1|CM|G|1373
8OI5|1|CM|A|1374
8OI5|1|CM|C|1375
8OI5|1|CM|U|1376
8OI5|1|CM|A|1377
*
8OI5|1|CM|U|1393
8OI5|1|CM|G|1394
8OI5|1|CM|G|1395
8OI5|1|CM|A|1396
8OI5|1|CM|A|1397
8OI5|1|CM|G|1398
8OI5|1|CM|U|1399
8OI5|1|CM|U|1400
8OI5|1|CM|U|1401
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CS
- Ribosomal protein S7
- Chain DD
- 40S ribosomal protein S16
- Chain DE
- 40S ribosomal protein S17-B
- Chain DH
- Ribosomal protein S10
- Chain DQ
- 40S ribosomal protein S29A
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