J3_8OIN_015
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UU*AAUAACCCA*UGA
- Length
- 14 nucleotides
- Bulged bases
- 8OIN|1|AA|C|372
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OIN_015 not in the Motif Atlas
- Geometric match to J3_8B0X_003
- Geometric discrepancy: 0.3979
- The information below is about J3_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OIN|1|AA|U|326
8OIN|1|AA|U|327
*
8OIN|1|AA|A|367
8OIN|1|AA|A|368
8OIN|1|AA|U|369
8OIN|1|AA|A|370
8OIN|1|AA|A|371
8OIN|1|AA|C|372
8OIN|1|AA|C|373
8OIN|1|AA|C|374
8OIN|1|AA|A|375
*
8OIN|1|AA|U|382
8OIN|1|AA|G|383
8OIN|1|AA|A|384
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AE
- Mitoribosomal protein bs6m, mrps6
- Chain AP
- Mitochondrial ribosomal protein S18C
- Chain AQ
- 28S ribosomal protein S21, mitochondrial
- Chain Ac
- Coiled-coil-helix-coiled-coil-helix domain containing 1
- Chain Ai
- Mitochondrial ribosomal protein S11
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