J3_8OIN_016

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

8OIN|1|AA|A|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIN_016 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4734

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8OIN|1|AA|C|542
8OIN|1|AA|A|543
8OIN|1|AA|C|544
8OIN|1|AA|C|545
*
8OIN|1|AA|G|788
8OIN|1|AA|C|789
8OIN|1|AA|A|790
8OIN|1|AA|G|791
8OIN|1|AA|U|792
8OIN|1|AA|A|793
8OIN|1|AA|A|794
*
8OIN|1|AA|U|816
8OIN|1|AA|G|817
8OIN|1|AA|A|818
8OIN|1|AA|A|819
8OIN|1|AA|U|820
8OIN|1|AA|A|821
8OIN|1|AA|A|822
8OIN|1|AA|G|823

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

Mitochondrial ribosomal protein S7

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain containing 1

Chain Ag

uS9m