J3_8OIR_004

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIR_004 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0794

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OIR|1|AA|A|551
8OIR|1|AA|G|552
8OIR|1|AA|G|553
8OIR|1|AA|A|554
*
8OIR|1|AA|U|717
8OIR|1|AA|A|718
8OIR|1|AA|C|719
*
8OIR|1|AA|G|774
8OIR|1|AA|G|775
8OIR|1|AA|A|776
8OIR|1|AA|U|777

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AG

P-site Met-tRNA(Met)

Chain Ag

28S ribosomal protein S9, mitochondrial