J3_8OIR_009
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 8OIR|1|B8|G|248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OIR_009 not in the Motif Atlas
- Homologous match to J3_4WF9_002
- Geometric discrepancy: 0.087
- The information below is about J3_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8OIR|1|B8|C|245
8OIR|1|B8|G|246
8OIR|1|B8|A|247
8OIR|1|B8|G|248
8OIR|1|B8|C|249
8OIR|1|B8|U|250
8OIR|1|B8|A|251
*
8OIR|1|B8|U|313
8OIR|1|B8|A|314
8OIR|1|B8|G|315
*
8OIR|1|B8|C|331
8OIR|1|B8|G|332
8OIR|1|B8|A|333
8OIR|1|B8|G|334
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BJ
- 39S ribosomal protein L34, mitochondrial
- Chain BL
- 39S ribosomal protein L2, mitochondrial
- Chain Bq
- 39S ribosomal protein L41, mitochondrial
- Chain Bu
- 39S ribosomal protein L45, mitochondrial
Coloring options: