J3_8OIR_013

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8OIR|1|B8|A|1335, 8OIR|1|B8|U|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIR_013 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0989

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

8OIR|1|B8|C|1334
8OIR|1|B8|A|1335
8OIR|1|B8|U|1336
8OIR|1|B8|C|1337
*
8OIR|1|B8|G|1362
8OIR|1|B8|U|1363
8OIR|1|B8|U|1364
*
8OIR|1|B8|A|1378
8OIR|1|B8|U|1379
8OIR|1|B8|U|1380
8OIR|1|B8|A|1381
8OIR|1|B8|A|1382
8OIR|1|B8|A|1383
8OIR|1|B8|G|1384

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial

Chain Bh

39S ribosomal protein S18a, mitochondrial