J3_8OIS_009
3D structure
- PDB id
- 8OIS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUCAG*CGCAAGU*AAAGACG
- Length
- 20 nucleotides
- Bulged bases
- 8OIS|1|AA|U|623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OIS_009 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.5671
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OIS|1|AA|C|621
8OIS|1|AA|U|622
8OIS|1|AA|U|623
8OIS|1|AA|C|624
8OIS|1|AA|A|625
8OIS|1|AA|G|626
*
8OIS|1|AA|C|655
8OIS|1|AA|G|656
8OIS|1|AA|C|657
8OIS|1|AA|A|658
8OIS|1|AA|A|659
8OIS|1|AA|G|660
8OIS|1|AA|U|661
*
8OIS|1|AA|A|670
8OIS|1|AA|A|671
8OIS|1|AA|A|672
8OIS|1|AA|G|673
8OIS|1|AA|A|674
8OIS|1|AA|C|675
8OIS|1|AA|G|676
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AB
- 28S ribosomal protein S35, mitochondrial
- Chain AC
- 28S ribosomal protein S24, mitochondrial
- Chain AH
- 28S ribosomal protein S10, mitochondrial
- Chain AK
- 28S ribosomal protein S14, mitochondrial
- Chain Ad
- 28S ribosomal protein S5, mitochondrial
- Chain Ag
- 28S ribosomal protein S9, mitochondrial
Coloring options: