J3_8OO0_002
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAACUA*UGG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8OO0|1|1|A|799, 8OO0|1|1|G|906
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_002 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.2448
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OO0|1|1|U|796
8OO0|1|1|G|797
8OO0|1|1|A|798
8OO0|1|1|A|799
8OO0|1|1|C|800
8OO0|1|1|U|801
8OO0|1|1|A|802
*
8OO0|1|1|U|887
8OO0|1|1|G|888
8OO0|1|1|G|889
*
8OO0|1|1|C|905
8OO0|1|1|G|906
8OO0|1|1|A|907
8OO0|1|1|A|908
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LN
- Ribosomal protein L15
- Chain Lj
- Ribosomal protein L37
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