J3_8OO0_014

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OO0_014 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1455

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OO0|1|2|C|1158
8OO0|1|2|C|1159
8OO0|1|2|A|1160
8OO0|1|2|G|1161
*
8OO0|1|2|C|1577
8OO0|1|2|U|1578
8OO0|1|2|A|1579
8OO0|1|2|G|1580
8OO0|1|2|U|1581
8OO0|1|2|A|1582
8OO0|1|2|A|1583
*
8OO0|1|2|U|1605
8OO0|1|2|G|1606
8OO0|1|2|A|1607
8OO0|1|2|U|1608
8OO0|1|2|U|1609
8OO0|1|2|A|1610
8OO0|1|2|C|1611
8OO0|1|2|G|1612

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain Sc

40S ribosomal protein S28-like protein