J3_8OO0_015
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_015 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1537
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OO0|1|2|U|1165
8OO0|1|2|G|1166
8OO0|1|2|G|1167
8OO0|1|2|A|1168
*
8OO0|1|2|U|1464
8OO0|1|2|A|1465
8OO0|1|2|C|1466
*
8OO0|1|2|G|1570
8OO0|1|2|G|1571
8OO0|1|2|A|1572
8OO0|1|2|A|1573
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain SS
- Putative ribosomal protein
- Chain ST
- 40S ribosomal protein S19-like protein
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