J3_8OO0_017
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGAC*GGGUG*UUAGAUG
- Length
- 17 nucleotides
- Bulged bases
- 8OO0|1|2|G|1441
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_017 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.4286
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|2|C|1213
8OO0|1|2|A|1214
8OO0|1|2|G|1215
8OO0|1|2|A|1216
8OO0|1|2|C|1217
*
8OO0|1|2|G|1260
8OO0|1|2|G|1261
8OO0|1|2|G|1262
8OO0|1|2|U|1263
8OO0|1|2|G|1264
*
8OO0|1|2|U|1438
8OO0|1|2|U|1439
8OO0|1|2|A|1440
8OO0|1|2|G|1441
8OO0|1|2|A|1442
8OO0|1|2|U|1443
8OO0|1|2|G|1444
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Methionine aminopeptidase 2
- Chain SK
- 40S ribosomal protein s10-like protein
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- 40S ribosomal protein S27a-like protein
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