J3_8OVE_011
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAA*UGUAG*UACG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_011 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1747
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8OVE|1|BA|C|949
8OVE|1|BA|A|950
8OVE|1|BA|A|951
*
8OVE|1|BA|U|983
8OVE|1|BA|G|984
8OVE|1|BA|U|985
8OVE|1|BA|A|986
8OVE|1|BA|G|987
*
8OVE|1|BA|U|1012
8OVE|1|BA|A|1013
8OVE|1|BA|C|1014
8OVE|1|BA|G|1015
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- SrRNA 1
- Chain BT
- 60S ribosomal protein L19, putative
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bo
- 60S ribosomal protein L37a, putative
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