J3_8OVE_013
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGGAGCG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 8OVE|1|BA|A|1670
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_013 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.1903
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OVE|1|BA|U|1667
8OVE|1|BA|G|1668
8OVE|1|BA|G|1669
8OVE|1|BA|A|1670
8OVE|1|BA|G|1671
8OVE|1|BA|C|1672
8OVE|1|BA|G|1673
*
8OVE|1|BB|C|40
8OVE|1|BB|A|41
8OVE|1|BB|A|42
*
8OVE|1|BB|U|54
8OVE|1|BB|C|55
8OVE|1|BB|U|56
8OVE|1|BB|G|57
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BE
- SrRNA 1
- Chain BG
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- 60S ribosomal protein L19, putative
- Chain Bj
- 60S ribosomal protein L34, putative
Coloring options: