J3_8OVE_016
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUC*GAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- 8OVE|1|BB|A|1146
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_016 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1225
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BB|C|1107
8OVE|1|BB|U|1108
8OVE|1|BB|C|1109
*
8OVE|1|BB|G|1133
8OVE|1|BB|A|1134
8OVE|1|BB|A|1135
*
8OVE|1|BB|U|1144
8OVE|1|BB|A|1145
8OVE|1|BB|A|1146
8OVE|1|BB|A|1147
8OVE|1|BB|U|1148
8OVE|1|BB|G|1149
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 5S ribosomal RNA; 5S rRNA
- Chain BL
- 60S ribosomal protein L11, putative
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bu
- 60S ribosomal protein L5, putative
Coloring options: