J3_8OVE_022
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AC*GAACUACAG*CAU
- Length
- 14 nucleotides
- Bulged bases
- 8OVE|1|AA|C|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_022 not in the Motif Atlas
- Geometric match to J3_1G1X_002
- Geometric discrepancy: 0.3435
- The information below is about J3_1G1X_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|AA|A|1160
8OVE|1|AA|C|1161
*
8OVE|1|AA|G|1205
8OVE|1|AA|A|1206
8OVE|1|AA|A|1207
8OVE|1|AA|C|1208
8OVE|1|AA|U|1209
8OVE|1|AA|A|1210
8OVE|1|AA|C|1211
8OVE|1|AA|A|1212
8OVE|1|AA|G|1213
*
8OVE|1|AA|C|1220
8OVE|1|AA|A|1221
8OVE|1|AA|U|1222
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A0
- 40S ribosomal protein S3a
- Chain AH
- 40S ribosomal protein S14
- Chain AV
- 40S ribosomal protein S26
- Chain Be
- 60S ribosomal protein L2, putative
- Chain Bo
- 60S ribosomal protein L37a, putative
Coloring options: