J3_8OVE_025

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UGUUU*GUCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OVE_025 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.4869

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.5

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8OVE|1|AA|U|1698
8OVE|1|AA|G|1699
*
8OVE|1|AA|U|1708
8OVE|1|AA|G|1709
8OVE|1|AA|U|1710
8OVE|1|AA|U|1711
8OVE|1|AA|U|1712
*
8OVE|1|AA|G|1723
8OVE|1|AA|U|1724
8OVE|1|AA|C|1725
8OVE|1|AA|A|1726
8OVE|1|AA|A|1727

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AC

40S ribosomal protein SA

Chain AL

40S ribosomal protein S17, putative

Chain AP

40S ribosomal protein S2, putative