J3_8OVE_029
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUGAAAAG*CC*GA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_029 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.1215
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BA|U|440
8OVE|1|BA|U|441
8OVE|1|BA|G|442
8OVE|1|BA|A|443
8OVE|1|BA|A|444
8OVE|1|BA|A|445
8OVE|1|BA|A|446
8OVE|1|BA|G|447
*
8OVE|1|BA|C|474
8OVE|1|BA|C|475
*
8OVE|1|BC|G|18
8OVE|1|BC|A|19
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BC
- 5.8S rRNA
Nearby chains
- Chain BZ
- 60S ribosomal protein L26, putative
- Chain Bq
- 60S ribosomal protein L39, putative
- Chain Br
- 60S ribosomal protein L4
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