J3_8OZ0_007
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 8OZ0|1|W|C|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OZ0_007 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.5807
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8OZ0|1|W|U|1340
8OZ0|1|W|C|1341
8OZ0|1|W|U|1342
8OZ0|1|W|U|1343
8OZ0|1|W|A|1344
8OZ0|1|W|G|1345
*
8OZ0|1|W|C|1384
8OZ0|1|W|G|1385
8OZ0|1|W|A|1386
8OZ0|1|W|G|1387
8OZ0|1|W|A|1388
8OZ0|1|W|C|1389
*
8OZ0|1|W|G|1481
8OZ0|1|W|C|1482
8OZ0|1|W|A|1483
8OZ0|1|W|A|1484
8OZ0|1|W|U|1485
8OZ0|1|W|A|1486
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain G
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain O
- 40S ribosomal protein S2
- Chain g
- 40S ribosomal protein S16
- Chain h
- 40S ribosomal protein S3
- Chain o
- 40S ribosomal protein S29
- Chain v
- 40S ribosomal protein S17
- Chain w
- 40S ribosomal protein S20
Coloring options: