J3_8OZ0_010

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

8OZ0|1|W|A|45, 8OZ0|1|W|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OZ0_010 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1035

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OZ0|1|W|A|40
8OZ0|1|W|G|41
8OZ0|1|W|A|42
8OZ0|1|W|U|43
8OZ0|1|W|U|44
8OZ0|1|W|A|45
8OZ0|1|W|A|46
8OZ0|1|W|G|47
*
8OZ0|1|W|C|479
8OZ0|1|W|G|480
8OZ0|1|W|C|481
8OZ0|1|W|G|482
8OZ0|1|W|C|483
8OZ0|1|W|A2M|484
8OZ0|1|W|A|485
8OZ0|1|W|A|486
8OZ0|1|W|U|487
*
8OZ0|1|W|A|512
8OZ0|1|W|G|513
8OZ0|1|W|U|514

Current chains

Chain W

18S rRNA

Nearby chains

Chain Z

40S ribosomal protein S9

Chain a

40S ribosomal protein S23