J3_8P03_007

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8P03|1|2|G|1270, 8P03|1|2|G|1503, 8P03|1|2|U|1505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P03_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1306

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8P03|1|2|C|1268
8P03|1|2|C|1269
8P03|1|2|G|1270
8P03|1|2|G|1271
8P03|1|2|A|1272
8P03|1|2|C|1273
*
8P03|1|2|G|1316
8P03|1|2|G|1317
8P03|1|2|G|1318
8P03|1|2|U|1319
8P03|1|2|G|1320
*
8P03|1|2|U|1500
8P03|1|2|U|1501
8P03|1|2|A|1502
8P03|1|2|G|1503
8P03|1|2|A|1504
8P03|1|2|U|1505
8P03|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein eS10

Chain e

40S ribosomal protein S29

Chain f

ribosomal protein eS31