J3_8P03_010
3D structure
- PDB id
- 8P03 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with m6A mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8P03|1|2|U|1530, 8P03|1|2|G|1598
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P03_010 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1456
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8P03|1|2|C|1527
8P03|1|2|A|1528
8P03|1|2|C|1529
8P03|1|2|U|1530
8P03|1|2|G|1531
*
8P03|1|2|C|1592
8P03|1|2|G|1593
8P03|1|2|U|1594
8P03|1|2|G|1595
8P03|1|2|A|1596
8P03|1|2|U|1597
8P03|1|2|G|1598
8P03|1|2|G|1599
*
8P03|1|2|C|1630
8P03|1|2|G|1631
8P03|1|2|A|1632
8P03|1|2|G|1633
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- Ribosomal protein S5
- Chain U
- 40S ribosomal protein uS13
- Chain V
- 40S ribosomal protein eS19
- Chain n
- 40S ribosomal protein S25
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