J3_8P09_001

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P09_001 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.224

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8P09|1|2|A|812
8P09|1|2|G|813
8P09|1|2|A|814
8P09|1|2|G|815
*
8P09|1|2|C|825
8P09|1|2|A|826
8P09|1|2|G|827
*
8P09|1|2|C|839
8P09|1|2|U|840
8P09|1|2|G|841
8P09|1|2|G|842
8P09|1|2|A|843
8P09|1|2|U|844

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

40S ribosomal protein S9

Chain a

40S ribosomal protein S24