J3_8P09_004
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P09_004 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1501
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P09|1|2|C|1214
8P09|1|2|C|1215
8P09|1|2|A|1216
8P09|1|2|G|1217
*
8P09|1|2|C|1640
8P09|1|2|C|1641
8P09|1|2|A|1642
8P09|1|2|G|1643
8P09|1|2|U|1644
8P09|1|2|A|1645
8P09|1|2|A|1646
*
8P09|1|2|U|1668
8P09|1|2|G|1669
8P09|1|2|A|1670
8P09|1|2|U|1671
8P09|1|2|U|1672
8P09|1|2|A|1673
8P09|1|2|A|1674
8P09|1|2|G|1675
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- Ribosomal protein S5
- Chain S
- 40S ribosomal protein uS9
- Chain d
- 40S ribosomal protein S28
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