J3_8P09_005
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P09_005 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0864
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8P09|1|2|U|1221
8P09|1|2|G|1222
8P09|1|2|G|1223
8P09|1|2|A|1224
*
8P09|1|2|U|1525
8P09|1|2|A|1526
8P09|1|2|C|1527
*
8P09|1|2|G|1633
8P09|1|2|G|1634
8P09|1|2|A|1635
8P09|1|2|A|1636
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain H
- Ribosomal protein S5
- Chain S
- 40S ribosomal protein uS9
- Chain U
- 40S ribosomal protein uS13
- Chain V
- 40S ribosomal protein eS19
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