J3_8P09_007
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 8P09|1|2|G|1270, 8P09|1|2|G|1503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P09_007 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1346
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8P09|1|2|C|1268
8P09|1|2|C|1269
8P09|1|2|G|1270
8P09|1|2|G|1271
8P09|1|2|A|1272
8P09|1|2|C|1273
*
8P09|1|2|G|1316
8P09|1|2|G|1317
8P09|1|2|G|1318
8P09|1|2|U|1319
8P09|1|2|G|1320
*
8P09|1|2|U|1500
8P09|1|2|U|1501
8P09|1|2|A|1502
8P09|1|2|G|1503
8P09|1|2|A|1504
8P09|1|2|U|1505
8P09|1|2|G|1506
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain M
- 40S ribosomal protein eS10
- Chain e
- 40S ribosomal protein S29
- Chain f
- ribosomal protein eS31
- Chain j
- Eukaryotic translation initiation factor 4C
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