J3_8P17_005

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8P17|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P17_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1241

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8P17|1|1|C|1306
8P17|1|1|A|1307
8P17|1|1|A|1308
8P17|1|1|G|1309
*
8P17|1|1|C|1605
8P17|1|1|C|1606
8P17|1|1|C|1607
8P17|1|1|A|1608
8P17|1|1|A|1609
8P17|1|1|A|1610
8P17|1|1|C|1611
*
8P17|1|1|G|1620
8P17|1|1|U|1621
8P17|1|1|G|1622

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34