J3_8P17_010

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8P17|1|2|U|871, 8P17|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P17_010 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0559

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8P17|1|2|C|826
8P17|1|2|U|827
8P17|1|2|U|828
8P17|1|2|G|829
*
8P17|1|2|C|857
8P17|1|2|G|858
8P17|1|2|G|859
8P17|1|2|A|860
8P17|1|2|G|861
*
8P17|1|2|C|868
8P17|1|2|G|869
8P17|1|2|U|870
8P17|1|2|U|871
8P17|1|2|A|872
8P17|1|2|A|873
8P17|1|2|G|874

Current chains

Chain 2

16S RNA

Nearby chains

Chain g

Small ribosomal subunit protein uS2

Chain m

Small ribosomal subunit protein uS8

Chain z

Small ribosomal subunit protein bS21