J3_8P2F_022

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8P2F|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2F_022 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.1544

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8P2F|1|A|C|272
8P2F|1|A|A|273
8P2F|1|A|A|274
8P2F|1|A|A|275
8P2F|1|A|C|276
*
8P2F|1|A|G|295
8P2F|1|A|G|296
8P2F|1|A|G|297
8P2F|1|A|U|298
8P2F|1|A|U|299
8P2F|1|A|G|300
8P2F|1|A|U|301
8P2F|1|A|A|302
*
8P2F|1|A|U|415
8P2F|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains