J3_8P2F_028
3D structure
- PDB id
- 8P2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CC*GUUAAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 8P2F|1|A|U|2853, 8P2F|1|A|A|2855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P2F_028 not in the Motif Atlas
- Homologous match to J3_4WF9_021
- Geometric discrepancy: 0.1257
- The information below is about J3_4WF9_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8P2F|1|A|C|2834
8P2F|1|A|C|2835
*
8P2F|1|A|G|2851
8P2F|1|A|U|2852
8P2F|1|A|U|2853
8P2F|1|A|A|2854
8P2F|1|A|A|2855
8P2F|1|A|U|2856
*
8P2F|1|A|A|2902
8P2F|1|A|A|2903
8P2F|1|A|U|2904
8P2F|1|A|C|2905
8P2F|1|A|G|2906
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain H
- 50S ribosomal protein L3
- Chain Q
- 50S ribosomal protein L17
Coloring options: