J3_8P2G_018
3D structure
- PDB id
- 8P2G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.02 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 8P2G|1|a|U|1250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P2G_018 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1267
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8P2G|1|a|C|1247
8P2G|1|a|A|1248
8P2G|1|a|A|1249
8P2G|1|a|U|1250
8P2G|1|a|G|1251
*
8P2G|1|a|C|1306
8P2G|1|a|U|1307
8P2G|1|a|C|1308
8P2G|1|a|A|1309
8P2G|1|a|G|1310
8P2G|1|a|U|1311
8P2G|1|a|U|1312
8P2G|1|a|C|1313
*
8P2G|1|a|G|1344
8P2G|1|a|C|1345
8P2G|1|a|U|1346
8P2G|1|a|G|1347
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S7
- Chain n
- 30S ribosomal protein S13
Coloring options: