J3_8P2H_017

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

8P2H|1|a|U|1250, 8P2H|1|a|U|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_017 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1317

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8P2H|1|a|C|1247
8P2H|1|a|A|1248
8P2H|1|a|A|1249
8P2H|1|a|U|1250
8P2H|1|a|G|1251
*
8P2H|1|a|C|1306
8P2H|1|a|U|1307
8P2H|1|a|C|1308
8P2H|1|a|A|1309
8P2H|1|a|G|1310
8P2H|1|a|U|1311
8P2H|1|a|U|1312
8P2H|1|a|C|1313
*
8P2H|1|a|G|1344
8P2H|1|a|C|1345
8P2H|1|a|U|1346
8P2H|1|a|G|1347

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain n

30S ribosomal protein S13