3D structure

PDB id
8P2H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.49 Å

Loop

Sequence
CAAAC*GGGUUGUA*UG
Length
15 nucleotides
Bulged bases
8P2H|1|A|U|301
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8P2H_021 not in the Motif Atlas
Homologous match to J3_4WF9_022
Geometric discrepancy: 0.154
The information below is about J3_4WF9_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97971.2
Basepair signature
cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

8P2H|1|A|C|272
8P2H|1|A|A|273
8P2H|1|A|A|274
8P2H|1|A|A|275
8P2H|1|A|C|276
*
8P2H|1|A|G|295
8P2H|1|A|G|296
8P2H|1|A|G|297
8P2H|1|A|U|298
8P2H|1|A|U|299
8P2H|1|A|G|300
8P2H|1|A|U|301
8P2H|1|A|A|302
*
8P2H|1|A|U|415
8P2H|1|A|G|416

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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