J3_8P2H_027

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CC*GUUAAU*AAUCG

Length

13 nucleotides

Bulged bases

8P2H|1|A|U|2853, 8P2H|1|A|A|2855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_027 not in the Motif Atlas

Homologous match to J3_4WF9_021

Geometric discrepancy: 0.121

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8P2H|1|A|C|2834
8P2H|1|A|C|2835
*
8P2H|1|A|G|2851
8P2H|1|A|U|2852
8P2H|1|A|U|2853
8P2H|1|A|A|2854
8P2H|1|A|A|2855
8P2H|1|A|U|2856
*
8P2H|1|A|A|2902
8P2H|1|A|A|2903
8P2H|1|A|U|2904
8P2H|1|A|C|2905
8P2H|1|A|G|2906

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL32

Chain H

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17