3D structure

PDB id
8P2H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.49 Å

Loop

Sequence
CC*GUUAAU*AAUCG
Length
13 nucleotides
Bulged bases
8P2H|1|A|U|2853, 8P2H|1|A|A|2855
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8P2H_027 not in the Motif Atlas
Homologous match to J3_4WF9_021
Geometric discrepancy: 0.121
The information below is about J3_4WF9_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76911.2
Basepair signature
cWW-tHS-F-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8P2H|1|A|C|2834
8P2H|1|A|C|2835
*
8P2H|1|A|G|2851
8P2H|1|A|U|2852
8P2H|1|A|U|2853
8P2H|1|A|A|2854
8P2H|1|A|A|2855
8P2H|1|A|U|2856
*
8P2H|1|A|A|2902
8P2H|1|A|A|2903
8P2H|1|A|U|2904
8P2H|1|A|C|2905
8P2H|1|A|G|2906

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 5
Large ribosomal subunit protein bL32
Chain H
50S ribosomal protein L3
Chain Q
50S ribosomal protein L17

Coloring options:


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