J3_8P2K_004

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

8P2K|1|A2|A|1680

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_004 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1345

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8P2K|1|A2|C|1219
8P2K|1|A2|C|1220
8P2K|1|A2|A|1221
8P2K|1|A2|G|1222
*
8P2K|1|A2|C|1646
8P2K|1|A2|C|1647
8P2K|1|A2|A|1648
8P2K|1|A2|G|1649
8P2K|1|A2|U|1650
8P2K|1|A2|A|1651
8P2K|1|A2|A|1652
*
8P2K|1|A2|U|1674
8P2K|1|A2|G|1675
8P2K|1|A2|A|1676
8P2K|1|A2|U|1677
8P2K|1|A2|U|1678
8P2K|1|A2|A2M|1679
8P2K|1|A2|A|1680
8P2K|1|A2|G|1681

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AB

40S ribosomal protein S28

Chain Ae

Ribosomal protein S5

Chain Ap

uS9