J3_8P2K_007

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8P2K|1|A2|G|1275, 8P2K|1|A2|G|1508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.108

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8P2K|1|A2|C|1273
8P2K|1|A2|C|1274
8P2K|1|A2|G|1275
8P2K|1|A2|G|1276
8P2K|1|A2|A|1277
8P2K|1|A2|C|1278
*
8P2K|1|A2|G|1321
8P2K|1|A2|G|1322
8P2K|1|A2|G|1323
8P2K|1|A2|U|1324
8P2K|1|A2|G|1325
*
8P2K|1|A2|U|1505
8P2K|1|A2|U|1506
8P2K|1|A2|A|1507
8P2K|1|A2|G|1508
8P2K|1|A2|A|1509
8P2K|1|A2|U|1510
8P2K|1|A2|G|1511

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

40S ribosomal protein S29

Chain Aj

S10_plectin domain-containing protein