J3_8P2K_041

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_041 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.274

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8P2K|1|B5|U|2418
8P2K|1|B5|G|2419
*
8P2K|1|B5|C|2428
8P2K|1|B5|G|2429
8P2K|1|B5|A|2430
8P2K|1|B5|C|2431
8P2K|1|B5|C|2432
*
8P2K|1|B5|G|2599
8P2K|1|B5|A|2600

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27

Chain Bg

60S ribosomal protein L34