J3_8P4V_009
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 8P4V|1|1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P4V_009 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.0602
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8P4V|1|1|A|828
8P4V|1|1|U|829
8P4V|1|1|A|830
8P4V|1|1|G|831
*
8P4V|1|1|C|863
8P4V|1|1|G|864
8P4V|1|1|U|865
8P4V|1|1|A|866
8P4V|1|1|G|867
*
8P4V|1|1|U|892
8P4V|1|1|C|893
8P4V|1|1|G|894
8P4V|1|1|A|895
8P4V|1|1|A|896
8P4V|1|1|U|897
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein L34-A
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
- Chain z
- 60S ribosomal protein L19-A
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