J3_8P4V_026
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8P4V|1|A|A|46, 8P4V|1|A|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P4V_026 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0767
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8P4V|1|A|A|41
8P4V|1|A|G|42
8P4V|1|A|A|43
8P4V|1|A|U|44
8P4V|1|A|U|45
8P4V|1|A|A|46
8P4V|1|A|A|47
8P4V|1|A|G|48
*
8P4V|1|A|C|431
8P4V|1|A|G|432
8P4V|1|A|C|433
8P4V|1|A|G|434
8P4V|1|A|C|435
8P4V|1|A|A|436
8P4V|1|A|A|437
8P4V|1|A|A|438
8P4V|1|A|U|439
*
8P4V|1|A|A|464
8P4V|1|A|G|465
8P4V|1|A|U|466
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S23-A
Coloring options: