J3_8P4V_048
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8P4V|1|AR|A|817, 8P4V|1|AR|G|924, 8P4V|1|AR|A|925
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P4V_048 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.0499
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8P4V|1|AR|U|814
8P4V|1|AR|G|815
8P4V|1|AR|A|816
8P4V|1|AR|A|817
8P4V|1|AR|C|818
8P4V|1|AR|U|819
8P4V|1|AR|A|820
*
8P4V|1|AR|U|905
8P4V|1|AR|A|906
8P4V|1|AR|G|907
*
8P4V|1|AR|C|923
8P4V|1|AR|G|924
8P4V|1|AR|A|925
8P4V|1|AR|A|926
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DL
- 60S ribosomal protein L37-A
- Chain DN
- 60S ribosomal protein L39
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