J3_8P4V_051

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P4V_051 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.0683

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8P4V|1|AR|G|1230
8P4V|1|AR|A|1231
8P4V|1|AR|C|1232
*
8P4V|1|AR|G|1256
8P4V|1|AR|C|1257
8P4V|1|AR|U|1258
8P4V|1|AR|A|1259
8P4V|1|AR|A|1260
8P4V|1|AR|G|1261
8P4V|1|AR|G|1262
*
8P4V|1|AR|C|1277
8P4V|1|AR|A|1278
8P4V|1|AR|C|1279

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain p0

60S acidic protein P0