J3_8P4V_073

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P4V_073 not in the Motif Atlas

Homologous match to J3_8P9A_076

Geometric discrepancy: 0.0587

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8P4V|1|sR|C|1161
8P4V|1|sR|C|1162
8P4V|1|sR|A|1163
8P4V|1|sR|G|1164
*
8P4V|1|sR|C|1581
8P4V|1|sR|U|1582
8P4V|1|sR|A|1583
8P4V|1|sR|G|1584
8P4V|1|sR|U|1585
8P4V|1|sR|A|1586
8P4V|1|sR|A|1587
*
8P4V|1|sR|U|1609
8P4V|1|sR|G|1610
8P4V|1|sR|A|1611
8P4V|1|sR|U|1612
8P4V|1|sR|U|1613
8P4V|1|sR|A|1614
8P4V|1|sR|C|1615
8P4V|1|sR|G|1616

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d8

40S ribosomal protein S28-A

Chain s5

40S ribosomal protein S5