J3_8P4V_074

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P4V_074 not in the Motif Atlas

Homologous match to J3_8P9A_077

Geometric discrepancy: 0.0541

The information below is about J3_8P9A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8P4V|1|sR|U|1168
8P4V|1|sR|G|1169
8P4V|1|sR|G|1170
8P4V|1|sR|A|1171
*
8P4V|1|sR|U|1468
8P4V|1|sR|A|1469
8P4V|1|sR|C|1470
*
8P4V|1|sR|G|1574
8P4V|1|sR|G|1575
8P4V|1|sR|A|1576
8P4V|1|sR|A|1577

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c8

40S ribosomal protein S18-A

Chain c9

40S ribosomal protein S19-A

Chain s5

40S ribosomal protein S5