J3_8P8M_018

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

8P8M|1|A|A|1065, 8P8M|1|A|U|1094, 8P8M|1|A|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P8M_018 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.2214

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8P8M|1|A|U|986
8P8M|1|A|U|987
*
8P8M|1|A|A|1062
8P8M|1|A|G|1063
8P8M|1|A|A|1064
8P8M|1|A|A|1065
8P8M|1|A|G|1066
*
8P8M|1|A|C|1092
8P8M|1|A|A|1093
8P8M|1|A|U|1094
8P8M|1|A|U|1095
8P8M|1|A|U|1096
8P8M|1|A|G|1097
8P8M|1|A|A|1098

Current chains

Chain A

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L7-A

Chain QT

60S ribosomal protein L21-A

Chain RB

60S ribosomal protein L29